Create README.md
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README.md
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# medcaption-vif-clip
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## Model Overview
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The `medcaption-vif-clip` model is a **Vision-Language Model (VLM)** designed specifically for **Medical Image Captioning**. It takes a medical scan image (e.g., X-ray, MRI, CT) as input and generates a descriptive, clinically relevant natural language caption/summary. This model utilizes a Vision-Encoder-Decoder architecture for robust image-to-text generation.
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## Model Architecture
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* **Architecture:** **Vision-Encoder-Decoder Model** (similar to ImageGPT/CLIP-GPT fusion).
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* **Vision Encoder:** A frozen **CLIP ViT-Base** variant, fine-tuned to extract visual features from medical images.
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* **Language Decoder:** A specialized, smaller **GPT-2** decoder, conditioned on the output of the Vision Encoder, generating the descriptive text.
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* **Mechanism:** The encoder processes the image, and its final hidden state is used to initialize the decoder's sequence generation process, ensuring the text is grounded in the visual evidence.
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## Intended Use
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* **Radiology Workflow:** Automating the first draft of image findings to increase radiologist efficiency.
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* **Medical Education:** Generating explanations for complex anatomical features or pathology in image libraries.
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* **Search and Indexing:** Creating searchable text descriptions for large archives of unlabeled medical scans.
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## Limitations and Ethical Considerations
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* **Safety Criticality:** **This model must NOT be used for primary diagnosis.** It is an automated tool and can generate inaccurate, incomplete, or confusing captions that could lead to misdiagnosis. All outputs require human expert validation.
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* **Generalization:** Trained mainly on chest X-rays and basic CTs. Performance may degrade severely on highly specialized or rare scan types (e.g., PET scans, functional MRI).
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* **Sensitive Content:** Dealing with medical imagery is inherently sensitive. Data protection and ethical handling of all input and output are paramount.
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* **Visual Ambiguity:** The model cannot report findings that are visually ambiguous or require comparison with a prior scan (longitudinal assessment), which a human radiologist would perform.
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## Example Code
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To generate a caption for a medical image:
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```python
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from transformers import VisionEncoderDecoderModel, AutoTokenizer, AutoFeatureExtractor
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from PIL import Image
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import torch
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# Load model, tokenizer (for the decoder), and feature extractor (for the encoder)
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model_name = "YourOrg/medcaption-vif-clip"
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model = VisionEncoderDecoderModel.from_pretrained(model_name)
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tokenizer = AutoTokenizer.from_pretrained("gpt2")
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feature_extractor = AutoFeatureExtractor.from_pretrained("clip-vit-base-patch16")
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# Set up generation parameters
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model.config.eos_token_id = tokenizer.eos_token_id
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model.config.decoder_start_token_id = tokenizer.bos_token_id
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# 1. Load the Image (Conceptual - Replace with actual image loading)
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# Example: X-ray of a chest
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dummy_image = Image.new('RGB', (224, 224), color = 'gray')
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# 2. Preprocess the image
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pixel_values = feature_extractor(images=dummy_image, return_tensors="pt").pixel_values
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# 3. Generate the caption
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generated_ids = model.generate(pixel_values, max_length=50, num_beams=4)
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# 4. Decode the text
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caption = tokenizer.decode(generated_ids[0], skip_special_tokens=True)
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print(f"Generated Medical Caption: {caption}")
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