debugging

SPIDER.py

@@ -77,6 +77,7 @@ def standardize_3D_image(
     image = skimage.transform.resize(image, resize_shape)
     return image
 
+
 # Define constants
 MIN_IVD = 0
 MAX_IVD = 9
@@ -486,15 +487,15 @@ class SPIDER(datasets.GeneratorBasedBuilder):
             # Convert .mha image to original size numeric array
             image_array_original = sitk.GetArrayFromImage(image)
             
+            # Rescale to UInt8 type (required for PyArrow and PIL)
+            image_array_rescaled = skimage.img_as_ubyte(image_array_original)
+
             # Convert .mha image to standardized numeric array
             image_array_standardized = standardize_3D_image(
-                image_array_original,
+                image_array_rescaled,
                 resize_shape,
             )
 
-            # Rescale image to UInt8 type (required for PyArrow and PIL)
-            image_array_standardized = skimage.img_as_ubyte(image_array_standardized)
-
             # Load .mha mask file
             mask_path = os.path.join(paths_dict['masks'], 'masks', example)
             mask = sitk.ReadImage(mask_path)
@@ -502,9 +503,12 @@ class SPIDER(datasets.GeneratorBasedBuilder):
             # Convert .mha mask to original size numeric array
             mask_array_original = sitk.GetArrayFromImage(mask)
 
+            # Rescale to UInt8 type (required for PyArrow and PIL)
+            mask_array_rescaled = skimage.img_as_ubyte(mask_array_original)
+
             # Convert .mha mask to standardized numeric array
             mask_array_standardized = standardize_3D_image(
-                mask_array_original,
+                mask_array_rescaled,
                 resize_shape,
             )