debugging

SPIDER.py

@@ -44,16 +44,15 @@ def subset_file_list(all_files: List[str], subset_ids: Set[int]):
 
 def standardize_3D_image(
     image: np.ndarray,
-    resize_shape: Tuple[int, int]
+    resize_shape: Tuple[int, int, int]
 ) -> np.ndarray:
     """Aligns dimensions of image to be (height, width, channels) and resizes
-    images to values specified in resize_shape (note that original channels
-    are preserved)."""
+    images to values specified in resize_shape."""
     # Align height, width, channel dims
     if image.shape[0] < image.shape[2]:
         image = np.transpose(image, axes=[1, 2, 0])
     # Resize image
-    image = skimage.transform.resize(image, resize_shape) # Preserves original channels
+    image = skimage.transform.resize(image, resize_shape)
     # Rescale to UInt8 type
     image = skimage.img_as_ubyte(image)
     return image
@@ -64,7 +63,7 @@ N_PATIENTS = 218
 MIN_IVD = 0
 MAX_IVD = 9
 DEFAULT_SCAN_TYPES = ['t1', 't2', 't2_SPACE']
-DEFAULT_RESIZE = (512, 512)
+DEFAULT_RESIZE = (512, 512, 30)
 
 _CITATION = """\
 @misc{vandergraaf2023lumbar,