Raymond-dev-546730/ClinicalThought-AI-8B

ClinicalThought-AI-8B delivers comprehensive clinical reasoning and diagnostic support designed specifically to assist medical professionals in complex patient care scenarios. This open source model provides transparent, step-by-step analysis across diverse medical cases while maintaining appropriate clinical boundaries.

Key Capabilities

• Clinical Reasoning: Shows transparent step-by-step diagnostic thinking and clinical decision-making process
• Multi-Specialty Medical Analysis: Handles complex cases across infectious disease, oncology, endocrinology, emergency medicine, and other specialties
• Professional Medical Support: Educational tool, case consultation, and clinical decision support for qualified healthcare providers

See It In Action:

Input Example:

I'm an internal medicine resident presenting a complex case at grand rounds. I'd like your help with clinical reasoning and differential diagnosis: A 34-year-old accountant presents with a 4-month history of intermittent abdominal pain, bloating, and alternating diarrhea and constipation. She reports feeling "foggy" mentally and has noticed her hair thinning. She's gained 8 pounds despite eating less due to nausea. Her periods have become irregular over the past year.
Relevant History: No significant past medical history, takes a daily multivitamin, no known drug allergies, no recent travel, works long hours with high stress levels.
Physical Exam Findings: Vitals normal, mild abdominal distension, no organomegaly, normal neurological exam, no skin lesions or rashes, normal thyroid palpation.
Initial Labs: mild iron deficiency anemia, low vitamin D, slightly elevated TSH at 6.2 (normal 0.4-4.0), normal comprehensive metabolic panel.
Please provide your assessment using this format: 1. Clinical Summary 2. Differential Diagnosis 3. Recommended Workup 4. Next Steps

Output Example:

The model produces structured output with two components:

1. The Clinical Thinking Process

<think>
Alright, let's think about this. The patient is a 34-year-old woman who's been having these troubling symptoms for quite some time now—abdominal pain, bloating, and this annoying mix of diarrhea and constipation. That sounds like it could be something affecting her gut, maybe an inflammatory condition or even something autoimmune.

Now, she's also feeling mentally foggy and has noticed her hair thinning out. That's interesting because it hints at some systemic issue that might not just be in her gut. And she's gained weight even though she's trying to eat less due to nausea. Hmm, that's a bit unusual for someone who's supposedly eating less.

Her periods have become irregular over the past year, which could be tied to hormonal changes or maybe something more systemic like an autoimmune condition. Stress from her job is a factor too, but let's focus on the medical aspects first.

On the physical exam, nothing too alarming jumps out—no organ enlargement or neurological issues, which is good to know. But she does have mild abdominal distension, which could be related to her gut symptoms.

Looking at her lab results, there's mild iron deficiency anemia and low vitamin D. That's something to note, especially with the iron deficiency pointing towards malabsorption. Her TSH is slightly elevated at 6.2, which is just a bit outside the normal range but not screaming hypothyroidism yet.

Putting all this together, I'm thinking about conditions that could explain her symptoms. Hashimoto's thyroiditis comes to mind because it can cause fatigue and weight changes, plus it might explain the irregular periods if her thyroid function is off. And then there's celiac disease, which fits with her gut issues and the malabsorption.

To really get to the bottom of this, I think we need to do some specific tests. A tissue transglutaminase IgA test would help us check for celiac disease. And since we're considering thyroid issues, a free T4 test could give us more insight into her thyroid function. Maybe even an EMA or EMA-ECA test if we're leaning towards celiac.

So, the next steps would be to order these tests and see where they lead us. If it's celiac, a gluten-free diet could really help her symptoms. And if it's Hashimoto's, managing her thyroid function might be key. It's all about connecting the dots with the right tests and then tailoring treatment based on what we find.
</think>

2. The Structured Clinical Assessment

<answer>
1. **Clinical Summary**: The patient is a 34-year-old woman presenting with a four-month history of gastrointestinal symptoms, including abdominal pain, bloating, and alternating diarrhea and constipation. She also reports mental fogginess, hair thinning, weight gain despite reduced intake, and irregular menstrual cycles. Physical examination reveals mild abdominal distension with no significant findings otherwise. Laboratory tests show mild iron deficiency anemia, low vitamin D levels, and a slightly elevated TSH.

2. **Differential Diagnosis**:
   - **Celiac Disease**: Given the gastrointestinal symptoms, malabsorption (indicated by iron deficiency anemia and low vitamin D), and potential systemic effects, celiac disease is a strong consideration.
   - **Hashimoto's Thyroiditis**: The slightly elevated TSH and systemic symptoms such as fatigue, weight changes, and irregular menstruation could suggest an autoimmune thyroid condition.
   - **Inflammatory Bowel Disease (IBD)**: Could explain the gastrointestinal symptoms but typically presents with more pronounced diarrhea or other systemic signs.
   - **Other Autoimmune Conditions**: Potential for overlapping autoimmune conditions affecting both the gut and other systems.

3. **Recommended Workup**:
   - **Tissue Transglutaminase IgA (tTG-IgA) Test**: To assess for celiac disease.
   - **Free T4 Test**: To evaluate thyroid function more accurately, especially with the slightly elevated TSH.
   - **Endomysial Antibody (EMA) and Endomysial Antibody-Endomysium Antibody (ECA) Tests**: If celiac disease is suspected, these tests can provide additional supportive evidence.
   - **Stool Studies for Infectious Causes**: To rule out infectious enteritis if symptoms are intermittent and suggestive of an infection.

4. **Next Steps**:
   - If celiac disease is suspected, initiate a gluten-free diet while awaiting test results to potentially alleviate symptoms.
   - If thyroid dysfunction is confirmed, consider initiating levothyroxine therapy to manage hypothyroidism.
   - Further evaluation for other autoimmune conditions may be warranted based on test results and clinical presentation.
</answer>

Getting Started

1. Installation

Choose your deployment method and install the required dependencies:

# For SafeTensors
pip install torch transformers accelerate safetensors
# For LLaMa.cpp
pip install llama-cpp-python

2. Configuration

Download and edit your chosen inference script to customize the analysis:

• Input data: Update the MEDICAL_QUERY variable with your clinical question or case
• Model location: Set the model_path variable to your downloaded model directory

3. Running Analysis

Run your script and the research plan will appear in the terminal:

# For SafeTensors
python Inference_safetensors.py
# For LLaMa.cpp
python Inference_llama.cpp.py

Repository Contents

• Model_Weights/ - All model weights in various formats
  • llama.cpp/ - LLaMA.cpp compatible weights with various quantization options available
  • safetensors/ - SafeTensors format models
  • LoRA_adapter/ - LoRA adapter weights
• Scripts/ - Ready-to-use inference scripts
  • Inference_llama.cpp.py - For LLaMA.cpp deployment
  • Inference_safetensors.py - For SafeTensors deployment
• Data/ - Training data
  • Dataset.jsonl - Complete JSONL training dataset
• Training/ - Training documentation and logs
  • Training_Logs.txt - Complete terminal logs from the training process
  • Training_Documentation.txt - Detailed training specifications and parameters

Attribution

ClinicalThought-AI-8B was developed by Raymond Lee. If you use this model in your work, please include a reference to this repository.