metadata
dataset_info:
features:
- name: A
dtype: string
- name: B
dtype: string
- name: SeqA
dtype: string
- name: SeqB
dtype: string
- name: OrgA
dtype: string
- name: OrgB
dtype: string
splits:
- name: combined
num_bytes: 5070808
num_examples: 6242
- name: combined_stringent
num_bytes: 4663902
num_examples: 5846
- name: manual
num_bytes: 2521732
num_examples: 2150
- name: manual_stringent
num_bytes: 2298975
num_examples: 1970
- name: pdb
num_bytes: 2572332
num_examples: 4128
- name: pdb_stringent
num_bytes: 2375069
num_examples: 3892
download_size: 7482698
dataset_size: 19502818
configs:
- config_name: default
data_files:
- split: combined
path: data/combined-*
- split: combined_stringent
path: data/combined_stringent-*
- split: manual
path: data/manual-*
- split: manual_stringent
path: data/manual_stringent-*
- split: pdb
path: data/pdb-*
- split: pdb_stringent
path: data/pdb_stringent-*
Non-interacting protein pairs from NEGATOME2.0
We map Uniprot ids with the ID mapping tool and record entires in which both sequences are found. PFAM entires are ommitted. Each split corresponds to a section of the dataset, labeled the same as the image below:
Please cite their paper if you use this dataset in your work
@article{Blohm2013,
title = {Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis},
volume = {42},
ISSN = {1362-4962},
url = {http://dx.doi.org/10.1093/nar/gkt1079},
DOI = {10.1093/nar/gkt1079},
number = {D1},
journal = {Nucleic Acids Research},
publisher = {Oxford University Press (OUP)},
author = {Blohm, Philipp and Frishman, Goar and Smialowski, Pawel and Goebels, Florian and Wachinger, Benedikt and Ruepp, Andreas and Frishman, Dmitrij},
year = {2013},
month = nov,
pages = {D396–D400}
}