Chris Oswald commited on
Commit
ba3659a
·
1 Parent(s): 0f058a2
Files changed (1) hide show
  1. SPIDER.py +6 -0
SPIDER.py CHANGED
@@ -479,6 +479,9 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  image_path = os.path.join(paths_dict['images'], 'images', example)
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  image = sitk.ReadImage(image_path)
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  # Convert .mha image to original size numeric array
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  image_array_original = sitk.GetArrayFromImage(image)
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@@ -495,6 +498,9 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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  mask = sitk.ReadImage(mask_path)
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  # Convert .mha mask to original size numeric array
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  mask_array_original = sitk.GetArrayFromImage(mask)
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  image_path = os.path.join(paths_dict['images'], 'images', example)
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  image = sitk.ReadImage(image_path)
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+ # Rescale image intensities to [0, 255] and cast as UInt8 type
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+ image = sitk.Cast(sitk.RescaleIntensity(image), sitk.sitkUInt8)
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+
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  # Convert .mha image to original size numeric array
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  image_array_original = sitk.GetArrayFromImage(image)
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  mask_path = os.path.join(paths_dict['masks'], 'masks', example)
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  mask = sitk.ReadImage(mask_path)
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+ # Rescale mask intensities to [0, 255] and cast as UInt8 type
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+ mask = sitk.Cast(sitk.RescaleIntensity(mask), sitk.sitkUInt8)
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+
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  # Convert .mha mask to original size numeric array
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  mask_array_original = sitk.GetArrayFromImage(mask)
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