genbio-ai/AIDO.Cell-3M

AIDO.Cell

For a more detailed description, refer to the SOTA model in this collection https://huggingface.co/genbio-ai/AIDO.Cell-100M

How to Use

For quickstart examples with vanilla HuggingFace, see this repo

To reproduce experiments, see ModelGenerator under experiments/AIDO.Cell.

Citation

Please cite AIDO.Cell using the following BibTeX code:

@inproceedings{ho_scaling_2024,
    title = {Scaling Dense Representations for Single Cell with Transcriptome-Scale Context},
    url = {https://www.biorxiv.org/content/10.1101/2024.11.28.625303v1},
    doi = {10.1101/2024.11.28.625303},
    publisher = {bioRxiv},
    author = {Ho, Nicholas and Ellington, Caleb N. and Hou, Jinyu and Addagudi, Sohan and Mo, Shentong and Tao, Tianhua and Li, Dian and Zhuang, Yonghao and Wang, Hongyi and Cheng, Xingyi and Song, Le and Xing, Eric P.},
    year = {2024},
    booktitle={NeurIPS 2024 Workshop on AI for New Drug Modalities},
}